| Accession | HsInv0474 | Region of the inversion | chr4:191180807-191273063 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 48,039 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr4:191180807-191224052 |
| Ancestral orientation | NA | Breakpoint 2 | chr4:191227873-191273063 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr4:191180807-191224052 | Breakpoint 2 | chr4:191227873-191273063 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0.34234 | ||||||||||||||||||||
| Support | 2 probes  | ||||||||||||||||||||||
| Individuals |
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+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr4:191180807-191224052 | Breakpoint 2 | chr4:191227873-191273063 | |||||||||||||||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 11.68 | GC content | 0.22 | Stability | 1.67 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr4:191179790-191180925 | 1,136 | chr4:191246030-191247165 | 1,136 | 0.997 | Inverted |
| chr4:191223378-191235212 | 11,835 | chr4:191236561-191248399 | 11,839 | 0.998 | Direct |
| chr4:191223378-191229967 | 6,590 | chr4:191229968-191236560 | 6,593 | 0.998 | Direct |
| chr4:191223378-191226674 | 3,297 | chr4:191226675-191229967 | 3,293 | 0.997 | Direct |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:33
| Breakpoint 1 | chr4:191180807-191224052 | Breakpoint 2 | chr4:191227873-191273063 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
