| Accession | HsInv0804 | Region of the inversion | chr19:6937259-7006616 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 35,795 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr19:6937259-6971439 |
| Ancestral orientation | NA | Breakpoint 2 | chr19:6973669-7006616 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr19:6937259-6971439 | Breakpoint 2 | chr19:6973669-7006616 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0.86093 | ||||||||||||||||||||
| Support | 2 probes  | ||||||||||||||||||||||
| Individuals |
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| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr19:6948951-6976788 | Breakpoint 2 | chr19:7005399-7037778 | ||||||||||||||||||||
| D/C Score | -0.32 | Disc. Support Prob. | 0.00027 | ||||||||||||||||||||
| Support | 2 probes | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr19:6937259-6971439 | Breakpoint 2 | chr19:6973669-7006616 | |||||||||||||
| Description | Breakpoints calculated without considering unreliable predictions | |||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.81 | GC content | 0.39 | Stability | 1.84 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr19:6969691-7003033 | 33,343 | chr19:6969691-7003033 | 33,343 | 0.988 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2016-12-09 18:59:43
| Breakpoint 1 | chr19:6937259-6971439 | Breakpoint 2 | chr19:6973669-7006616 |
| Assembly | hg18 | ||
| Description | Breakpoints calculated without considering unreliable predictions | ||
| Definition method | Default informatic definition | ||
- 2016-12-09 18:59:43
| Breakpoint 1 | chr19:6948951-6971439 | Breakpoint 2 | chr19:7005399-7006616 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
