| Accession | HsInv0232 | Region of the inversion | chr1:103981694-104060578 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 41,914 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr1:103981694-104016562 |
| Ancestral orientation | NA | Breakpoint 2 | chr1:104021503-104060578 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr1:103981694-104016562 | Breakpoint 2 | chr1:104021503-104060578 | ||||||||||||||||||||
| D/C Score | 0 | Disc. Support Prob. | 0.96948 | ||||||||||||||||||||
| Support | 7 probes  | ||||||||||||||||||||||
| Individuals |
| ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr1:103981694-104016562 | Breakpoint 2 | chr1:104021503-104060578 | |||||||||||||||||||||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||||||||||||||||||||
| Mechanism of origin |
ND
|
|||||||||||||||||||||||||||||||||||||||
| Flexibility | 9.88 | GC content | 0.6 | Stability | 2.13 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr1:103958705-103987459 | 28,755 | chr1:104012548-104050063 | 37,516 | 0.921 | Inverted |
| chr1:103963451-104012021 | 48,571 | chr1:104057620-104106172 | 48,553 | 0.997 | Direct |
| chr1:104000001-104012021 | 12,021 | chr1:104028238-104040259 | 12,022 | 1.000 | Inverted |
| chr1:104002368-104012021 | 9,654 | chr1:104057651-104066704 | 9,054 | 0.919 | Direct |
| chr1:104012548-104017471 | 4,924 | chr1:104052803-104057622 | 4,820 | 0.919 | Direct |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:41
| Breakpoint 1 | chr1:103981694-104016562 | Breakpoint 2 | chr1:104021503-104060578 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
