| Accession | HsInv0545 | Region of the inversion | chr15:42917294-43151155 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 200,950 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Breaks one gene | Breakpoint 1 | chr15:42917294-42951928 |
| Ancestral orientation | NA | Breakpoint 2 | chr15:43119964-43151155 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr15:42917294-42951928 | Breakpoint 2 | chr15:43119964-43151155 | ||||||||||||||||||||
| D/C Score | -2.1 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 4 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr15:42917294-42951928 | Breakpoint 2 | chr15:43119964-43151155 | |||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.29 | GC content | 0.4 | Stability | 1.9 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr15:42896927-42921707 | 24,781 | chr15:43138071-43162682 | 24,612 | 0.979 | Inverted |
| chr15:42921093-42937039 | 15,947 | chr15:43111125-43128706 | 17,582 | 0.973 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
- SORD
| Gene position | chr15:43102593-43154579 |
| Mechanism | Breaks one gene |
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:42
| Breakpoint 1 | chr15:42917294-42951928 | Breakpoint 2 | chr15:43119964-43151155 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
