| Accession | HsInv0375 | Region of the inversion | chr17:18952317-19043582 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 62,812 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr17:18952317-18970816 |
| Ancestral orientation | NA | Breakpoint 2 | chr17:19005174-19043582 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr17:18952317-18970816 | Breakpoint 2 | chr17:19005174-19043582 | ||||||||||||||||||||
| D/C Score | -2.79 | Disc. Support Prob. | 0.0002 | ||||||||||||||||||||
| Support | 3 probes  | ||||||||||||||||||||||
| Individuals |
| ||||||||||||||||||||||
| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr17:18952317-18970816 | Breakpoint 2 | chr17:19005174-19043582 | |||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||
| Mechanism of origin |
ND
|
|||||||||||||||||||||
| Flexibility | 10.19 | GC content | 0.63 | Stability | 2.18 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr17:18902710-18955376 | 52,667 | chr17:19028699-19081415 | 52,717 | 0.998 | Direct |
| chr17:18955372-18959913 | 4,542 | chr17:19028699-19033237 | 4,539 | 0.990 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:51
| Breakpoint 1 | chr17:18952317-18970816 | Breakpoint 2 | chr17:19005174-19043582 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
