| Accession | HsInv0579 | Region of the inversion | chr17:33405056-33684308 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 215,251 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr17:33405056-33451048 |
| Ancestral orientation | NA | Breakpoint 2 | chr17:33602295-33684308 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr17:33405056-33447987 | Breakpoint 2 | chr17:33602295-33645226 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 2 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr17:33407702-33451048 | Breakpoint 2 | chr17:33641252-33684308 | ||||||||||||||||||||
| D/C Score | -0.93 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 3 probes | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr17:33405056-33451048 | Breakpoint 2 | chr17:33602295-33684308 | |||||||||||||||||||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | |||||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 11.11 | GC content | 0.46 | Stability | 1.85 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr17:33409941-33424757 | 14,817 | chr17:33589379-33604176 | 14,798 | 0.997 | Direct |
| chr17:33424761-33429230 | 4,470 | chr17:33655528-33659998 | 4,471 | 1.000 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:52
| Breakpoint 1 | chr17:33405056-33451048 | Breakpoint 2 | chr17:33602295-33684308 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:52
| Breakpoint 1 | chr17:33407702-33447987 | Breakpoint 2 | chr17:33641252-33645226 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
