| Accession | HsInv0649 | Region of the inversion | chr1:150493197-150549702 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 33,258 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr1:150493197-150517075 |
| Ancestral orientation | NA | Breakpoint 2 | chr1:150527083-150549702 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Paired-end mapping analysis of the J. Craig Venter genome (HuRef) | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr1:150500702-150509570 | Breakpoint 2 | chr1:150533329-150543456 | ||||
| Individuals |
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- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr1:150488407-150511560 | Breakpoint 2 | chr1:150532207-150543807 | ||||||||||||||||||||
| D/C Score | -2.34 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 5 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr1:150493197-150517075 | Breakpoint 2 | chr1:150527083-150549702 | ||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
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| Flexibility | 10.81 | GC content | 0.39 | Stability | 1.8 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:25
| Breakpoint 1 | chr1:150488407-150511560 | Breakpoint 2 | chr1:150532207-150543807 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:25
| Breakpoint 1 | chr1:150494724-150515548 | Breakpoint 2 | chr1:150528610-150548175 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:25
| Breakpoint 1 | chr1:150493197-150517075 | Breakpoint 2 | chr1:150527083-150549702 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
