| Accession | HsInv0836 | Region of the inversion | chr16:44957279-44984617 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 13,719 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr16:44957279-44970899 |
| Ancestral orientation | NA | Breakpoint 2 | chr16:44970997-44984617 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
| Description | Next generation sequencing and analysis by paired-end mapping of a Korean individual genome | ||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr16:44964020-44964108 | Breakpoint 2 | chr16:44980497-44980572 | ||||
| Individuals |
| ||||||
| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Description | Paired-end mapping of 3-kb fragments in an African and in a putatively European individual with some predictions validated by PCR, fiber-FISH or comparison with Celera assembly | ||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||
| Name | |||||||||
| Breakpoint 1 | chr16:44964089-44964089 | Breakpoint 2 | chr16:44977807-44977807 | ||||||
| Individuals |
| ||||||||
| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr16:44957279-44970899 | Breakpoint 2 | chr16:44970997-44984617 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | ||||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
|
||||
| Flexibility | 11.97 | GC content | 0.35 | Stability | 1.84 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:15:18
| Breakpoint 1 | chr16:44963508-44964620 | Breakpoint 2 | chr16:44979972-44981097 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:15:18
| Breakpoint 1 | chr16:44957279-44970899 | Breakpoint 2 | chr16:44970997-44984617 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | ||
| Definition method | Default informatic definition | ||
