| Accession | HsInv0620 | Region of the inversion | chr16:44946754-44991254 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 30,532 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr16:44946754-44961071 |
| Ancestral orientation | NA | Breakpoint 2 | chr16:44977634-44991254 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Next generation sequencing and analysis by paired-end mapping of a Korean individual genome | ||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr16:44960471-44960566 | Breakpoint 2 | chr16:44990189-44990292 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Description | Paired-end mapping of 3-kb fragments in an African and in a putatively European individual with some predictions validated by PCR, fiber-FISH or comparison with Celera assembly | ||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||
| Name | |||||||||
| Breakpoint 1 | chr16:44953564-44953564 | Breakpoint 2 | chr16:44984444-44984444 | ||||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr16:44946754-44961071 | Breakpoint 2 | chr16:44977634-44991254 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | ||||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
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| Flexibility | 11.43 | GC content | 0.38 | Stability | 1.89 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:15:19
| Breakpoint 1 | chr16:44959966-44961071 | Breakpoint 2 | chr16:44989692-44990789 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:15:19
| Breakpoint 1 | chr16:44946754-44961071 | Breakpoint 2 | chr16:44977634-44991254 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | ||
| Definition method | Default informatic definition | ||
