| Accession | HsInv0850 | Region of the inversion | chr18:16759899-16779304 |
| Status | Unreliable prediction | Prediction type | Complex |
| Estimated Inversion Size | 4,211 bp | Supporting predictions | 10 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr18:16759899-16777618 |
| Ancestral orientation | NA | Breakpoint 2 | chr18:16766634-16779304 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Discovery, genotyping and phasing of structural variants detected from Illumina whole genome sequencing data of 769 individuals from 250 Dutch families belonging to the GoNL project | ||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||
| Name | |||
| Breakpoint 1 | chr18:16764899-16764899 | Breakpoint 2 | chr18:16772051-16772051 |
| Individuals | |||
| Name | |||
| Breakpoint 1 | chr18:16772029-16772029 | Breakpoint 2 | chr18:16774304-16774304 |
| Individuals | |||
| Description | Next generation sequencing and analysis by paired-end mapping of an individual genome of African origin | ||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr18:16772057-16772078 | Breakpoint 2 | chr18:16772195-16772195 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Description | Next generation sequencing and analysis by paired-end mapping of a Korean individual genome | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||
| Breakpoint 1 | chr18:16770128-16770183 | Breakpoint 2 | chr18:16772953-16773038 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Name | |||||||
| Breakpoint 1 | chr18:16770143-16770183 | Breakpoint 2 | chr18:16772953-16773007 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Name | |||||||
| Breakpoint 1 | chr18:16770990-16771103 | Breakpoint 2 | chr18:16772971-16773110 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Name | |||||||
| Breakpoint 1 | chr18:16771175-16771214 | Breakpoint 2 | chr18:16772814-16773017 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Name | |||||||
| Breakpoint 1 | chr18:16771160-16771243 | Breakpoint 2 | chr18:16773419-16773702 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Name | |||||||
| Breakpoint 1 | chr18:16771176-16771214 | Breakpoint 2 | chr18:16773517-16773702 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
| Name | |||||||
| Breakpoint 1 | chr18:16771178-16771214 | Breakpoint 2 | chr18:16773518-16773702 | ||||
| Individuals |
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| Comments | Prediction within region overlapping more than 90% of their length with simple repeats, low complexity repeats, or satellite repeats | ||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr18:16759899-16777618 | Breakpoint 2 | chr18:16766634-16779304 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint | ||||
| Mechanism of origin |
ND
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| Flexibility | 10.62 | GC content | 0.37 | Stability | 1.77 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2017-09-29 00:00:00
| Breakpoint 1 | chr18:16759899-16777618 | Breakpoint 2 | chr18:16766634-16777756 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint | ||
- 2017-09-29 00:00:00
| Breakpoint 1 | chr18:16759899-16777618 | Breakpoint 2 | chr18:16766634-16779304 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint | ||
- 2015-02-23 10:15:21
| Breakpoint 1 | chr18:16770643-16771760 | Breakpoint 2 | chr18:16773102-16774019 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:15:21
| Breakpoint 1 | chr18:16766517-16777618 | Breakpoint 2 | chr18:16766634-16777756 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint. Breakpoints calculated without considering unreliable predictions | ||
| Definition method | Default informatic definition | ||
